| TRACK 2005 | MTB 2005 | CROSS 2005 | ROAD 2006 | |||||||
| School | 2005-06 National Team Rank, Division 2 | Total Ranking Points | Rank | Points | Rank | Points | Rank | Points | Rank | Points |
| Lees-McRae College | 1 | 79 | 1 | 20 | 1 | 20 | 1 | 20 | 2 | 19 |
| Western Washington University | 2 | 63 | 6 | 15 | 7 | 14 | 4 | 17 | 4 | 17 |
| Dartmouth College | 3 | 41 | 14 | 7 | 2 | 19 | 6 | 15 | ||
| DePauw University | 4 | 36 | 3 | 18 | 3 | 18 | ||||
| Massachusetts Institute of Technology | 5 | 34 | 3 | 18 | 5 | 16 | ||||
| Whitman College | 6 | 31 | 10 | 11 | 1 | 20 | ||||
| Princeton University | 7 | 26 | 9 | 12 | 7 | 14 | ||||
| US Military Academy - Army | 8 | 25 | 2 | 19 | 15 | 6 | ||||
| Appalachian State University | 9 | 23 | 7 | 14 | 12 | 9 | ||||
| WARREN WILSON COLLEGE | 10 | 19 | 2 | 19 | ||||||
| UNION COLLEGE | 11 | 18 | 3 | 18 | ||||||
| MURRAY STATE UNIVERSITY | 12 | 17 | 4 | 17 | ||||||
| DePaul University | 13 | 17 | 4 | 17 | ||||||
| Univ. of Southern Maine | 14 | 16 | 5 | 16 | ||||||
| MICHIGAN TECH UNIVERSITY | 15 | 16 | 5 | 16 | ||||||
| Colorado School of Mines | 16 | 16 | 5 | 16 | ||||||
| Rennsselaer Polytechnic Institute | 17 | 15 | 6 | 15 | ||||||
| WESTERN STATE | 18 | 15 | 6 | 15 | ||||||
| University of Chicago | 19 | 15 | 7 | 14 | 20 | 1 | ||||
| Colby College | 20 | 15 | 10 | 11 | 17 | 4 | ||||
| Colorado College | 21 | 14 | 20 | 1 | 8 | 13 | ||||
| Fitchburg State | 22 | 13 | 8 | 13 | ||||||
| EAST TENNESSEE STATE | 23 | 13 | 8 | 13 | ||||||
| Portland State | 24 | 13 | 8 | 13 | ||||||
| University of Denver | 25 | 12 | 9 | 12 | ||||||
| ST. MICHAEL'S COLLEGE | 26 | 12 | 9 | 12 | ||||||
| US Air Force Academy | 27 | 11 | 10 | 11 | ||||||
| Mesa State College | 28 | 10 | 11 | 10 | ||||||
| Carleton College | 29 | 10 | 11 | 10 | ||||||
| ALLEGHENY COLLEGE | 30 | 10 | 11 | 10 | ||||||
| Connecticut College | 31 | 9 | 12 | 9 | ||||||
| NORTH DAKOTA STATE | 32 | 9 | 12 | 9 | ||||||
| Tufts University | 33 | 8 | 13 | 8 | ||||||
| Worcester Polytechnic Institute | 34 | 8 | 13 | 8 | ||||||
| WILLIAM AND MARY | 35 | 8 | 13 | 8 | ||||||
| Cumberland University | 36 | 7 | 14 | 7 | ||||||
| FRONT RANGE COMMUNITY COLLEGE | 37 | 6 | 15 | 6 | ||||||
| Bucknell University | 38 | 5 | 16 | 5 | ||||||
| WISCONSIN-EAU CLAIRE | 39 | 5 | 16 | 5 | ||||||
| SWANEE | 40 | 4 | 17 | 4 | ||||||
| American University | 41 | 3 | 18 | 3 | ||||||
| DAVIS & ELKINS COLLEGE | 42 | 3 | 18 | 3 | ||||||
| Johnson State College | 43 | 2 | 19 | 2 | ||||||
| LEHIGH UNIVERSITY | 44 | 2 | 19 | 2 | ||||||